Bill, it is possible the new Monarch V9 Pro will work with your PDF files properly. This is because one of the V9 Pro features is more behind the scenes capabilities for Monarch V9 Pro to "tweak" PDF files which do not follow Adobe standards to behave properly anyway. As Gareth Horton, Monarch Product Manager, noted in our [url="http://monarch.datawatch.com/monarchv9-demo-form.asp"]"What's New in Monarch V9" Flash demo[/url] (registration required), it's a bit like how early MS Internet Explorer and Adobe Acrobat coding was revised to account for various idiosyncrasies of certain HTML and PDF, so these files could be displayed properly anyway.
I hope you do not take this answer merely as an effort to sell you something. But, I think it is worth a try, and you can purchase Monarch as always risk free with our 30 day guarantee. Our Monarch team at 800-445-3311 can discuss with you further. I hope Monarch V9 Pro proves to solve this PDF problem for you.